STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_3597O-antigen polymerase. (438 aa)    
Predicted Functional Partners:
Ava_3002
Conserved hypothetical protein.
  
   
 0.769
Ava_2721
Protein of unknown function DUF1239.
  
   
 0.764
Ava_4283
Conserved hypothetical protein.
  
     0.721
Ava_0556
Conserved hypothetical protein.
  
     0.720
Ava_2580
TPR repeat protein.
  
     0.718
Ava_2920
Conserved hypothetical protein.
  
     0.701
Ava_1688
Conserved hypothetical protein.
  
     0.642
Ava_0501
Histidine kinase.
  
     0.602
Ava_0319
Conserved hypothetical protein.
  
     0.596
Ava_4368
Conserved hypothetical protein.
  
     0.592
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.