STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_3754Conserved hypothetical protein. (150 aa)    
Predicted Functional Partners:
Ava_2580
TPR repeat protein.
  
     0.744
Ava_0725
Peptidase, metallopeptidase.
  
     0.742
Ava_1391
Hypothetical protein.
  
     0.733
Ava_3528
Peptidoglycan-binding domain 1.
  
     0.705
Ava_2005
Conserved hypothetical protein.
  
     0.697
Ava_1696
Conserved hypothetical protein.
  
     0.694
Ava_4430
Conserved hypothetical protein.
  
     0.694
Ava_3345
Conserved hypothetical protein.
  
     0.684
Ava_2702
Conserved hypothetical protein.
  
     0.679
hetR
HetR peptidase, Serine peptidase, MEROPS family S48; Controls heterocyst differentiation. Has both a protease and a DNA-binding activity; Belongs to the peptidase S48 family.
  
     0.675
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.