STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_4191Multicopper oxidase, types 2 and 3. (556 aa)    
Predicted Functional Partners:
petE
Blue (type 1) copper domain protein; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
   
 
 0.790
Ava_4192
Conserved hypothetical protein.
       0.786
Ava_3677
Conserved hypothetical protein.
  
  
 0.667
Ava_4193
Conserved hypothetical protein.
       0.648
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
    
 
 0.647
Ava_4673
Proteinase inhibitor I4, serpin; Belongs to the serpin family.
   
  0.626
Ava_3208
Permease.
  
  
 0.520
Ava_2239
Adenylate/guanylate cyclase.
  
  
 0.470
Ava_4195
Conserved hypothetical protein.
     
 0.439
Ava_4190
2-keto-myo-inositol dehydratase.
       0.429
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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