Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_1012 | Ava_3303 | Ava_1012 | Ava_3303 | RNA-binding S4. | Conserved hypothetical protein. | 0.597 |
Ava_1012 | Ava_4213 | Ava_1012 | Ava_4213 | RNA-binding S4. | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | 0.459 |
Ava_1012 | mrnC | Ava_1012 | Ava_4412 | RNA-binding S4. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.701 |
Ava_1012 | sepF | Ava_1012 | Ava_2900 | RNA-binding S4. | Protein of unknown function DUF552; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.763 |
Ava_2157 | Ava_4213 | Ava_2157 | Ava_4213 | Arginine decarboxylase. | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | 0.753 |
Ava_2157 | mrnC | Ava_2157 | Ava_4412 | Arginine decarboxylase. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.506 |
Ava_2711 | Ava_4213 | Ava_2711 | Ava_4213 | Isopentenyl transferase. | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | 0.404 |
Ava_3303 | Ava_1012 | Ava_3303 | Ava_1012 | Conserved hypothetical protein. | RNA-binding S4. | 0.597 |
Ava_3303 | Ava_4213 | Ava_3303 | Ava_4213 | Conserved hypothetical protein. | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | 0.402 |
Ava_3303 | mrnC | Ava_3303 | Ava_4412 | Conserved hypothetical protein. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.510 |
Ava_4156 | Ava_4213 | Ava_4156 | Ava_4213 | Cystathionine beta-synthase. | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | 0.515 |
Ava_4212 | Ava_4213 | Ava_4212 | Ava_4213 | Delta-9 acyl-phospholipid desaturase. | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | 0.591 |
Ava_4213 | Ava_1012 | Ava_4213 | Ava_1012 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | RNA-binding S4. | 0.459 |
Ava_4213 | Ava_2157 | Ava_4213 | Ava_2157 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | Arginine decarboxylase. | 0.753 |
Ava_4213 | Ava_2711 | Ava_4213 | Ava_2711 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | Isopentenyl transferase. | 0.404 |
Ava_4213 | Ava_3303 | Ava_4213 | Ava_3303 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | Conserved hypothetical protein. | 0.402 |
Ava_4213 | Ava_4156 | Ava_4213 | Ava_4156 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | Cystathionine beta-synthase. | 0.515 |
Ava_4213 | Ava_4212 | Ava_4213 | Ava_4212 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | Delta-9 acyl-phospholipid desaturase. | 0.591 |
Ava_4213 | ddl | Ava_4213 | Ava_0360 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | D-alanine--D-alanine ligase; Cell wall formation. | 0.714 |
Ava_4213 | mrnC | Ava_4213 | Ava_4412 | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.472 |
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