STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_4425Diguanylate cyclase/phosphodiesterase with FHA and GAF sensor. (880 aa)    
Predicted Functional Partners:
Ava_1564
Multi-sensor hybrid histidine kinase.
 
 0.785
Ava_2845
Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF and PAS/PAC sensor.
 
 
 0.778
Ava_0238
Multi-component transcriptional regulator, winged helix family.
  
 
 0.761
Ava_1029
Multi-sensor hybrid histidine kinase.
 
 
 0.741
Ava_0638
Putative diguanylate cyclase (GGDEF domain) with PAS/PAC and Chase2 sensors.
 
 
0.738
Ava_4696
GAF sensor hybrid histidine kinase.
  
 
 0.738
Ava_0061
Chemotaxis sensory transducer.
 
 
 
 0.705
Ava_0828
Diguanylate cyclase/phosphodiesterase with GAF sensor.
 
  
0.702
Ava_0506
Chemotaxis sensory transducer.
 
 
 
 0.676
Ava_3778
Chemotaxis sensory transducer, Phytochrome sensor.
 
 
 0.671
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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