Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Ava_0544 | Ava_2630 | Conserved hypothetical protein. | Cobalamin B12-binding protein. | 0.509 |
Ava_0544 | Ava_3057 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.444 |
Ava_0544 | Ava_3508 | Conserved hypothetical protein. | Predicted signal transduction protein containing Nacht domain. | 0.424 |
Ava_0544 | Ava_3832 | Conserved hypothetical protein. | Succinoglycan biosynthesis ketolase. | 0.418 |
Ava_0544 | Ava_4131 | Conserved hypothetical protein. | Filamentous hemagglutinin-like protein. | 0.646 |
Ava_0544 | Ava_4179 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.517 |
Ava_0544 | Ava_4444 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.600 |
Ava_0544 | Ava_4445 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.585 |
Ava_0996 | Ava_4444 | PBS lyase HEAT-like repeat protein. | Conserved hypothetical protein. | 0.459 |
Ava_0996 | Ava_4445 | PBS lyase HEAT-like repeat protein. | Conserved hypothetical protein. | 0.565 |
Ava_1035 | Ava_2630 | Conserved hypothetical protein. | Cobalamin B12-binding protein. | 0.420 |
Ava_1035 | Ava_3057 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.677 |
Ava_1035 | Ava_3508 | Conserved hypothetical protein. | Predicted signal transduction protein containing Nacht domain. | 0.505 |
Ava_1035 | Ava_3832 | Conserved hypothetical protein. | Succinoglycan biosynthesis ketolase. | 0.679 |
Ava_1035 | Ava_4444 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.661 |
Ava_1035 | Ava_4445 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.716 |
Ava_2630 | Ava_0544 | Cobalamin B12-binding protein. | Conserved hypothetical protein. | 0.509 |
Ava_2630 | Ava_1035 | Cobalamin B12-binding protein. | Conserved hypothetical protein. | 0.420 |
Ava_2630 | Ava_3057 | Cobalamin B12-binding protein. | Conserved hypothetical protein. | 0.709 |
Ava_2630 | Ava_3508 | Cobalamin B12-binding protein. | Predicted signal transduction protein containing Nacht domain. | 0.693 |
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