Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ava_4530Conserved hypothetical protein. (85 aa)    
Predicted Functional Partners:
Ava_4529
Conserved hypothetical protein.
 
     0.723
Ava_0410
Conserved hypothetical protein.
  
     0.678
Ava_3167
Conserved hypothetical protein.
  
     0.653
Ava_3337
Conserved hypothetical protein.
  
     0.629
Ava_1042
Methyltransferase FkbM.
  
     0.626
Ava_0870
Conserved hypothetical protein.
  
     0.623
Ava_1383
Hemolytic protein HlpA-like protein.
  
     0.580
Ava_3959
Conserved hypothetical protein.
 
     0.568
Ava_4011
Conserved hypothetical protein.
  
     0.538
Ava_1894
Ferritin and Dps; Belongs to the Dps family.
 
     0.532
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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