STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_4571Conserved hypothetical protein. (73 aa)    
Predicted Functional Partners:
Ava_1488
Conserved hypothetical protein.
  
     0.732
Ava_3393
Transglutaminase-like protein.
  
     0.732
Ava_4930
Conserved hypothetical protein.
  
     0.726
Ava_2273
Conserved hypothetical protein.
 
     0.715
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
  
     0.714
Ava_3032
Conserved hypothetical protein.
  
     0.713
Ava_1247
Conserved hypothetical protein.
  
     0.709
Ava_0202
Conserved hypothetical protein.
  
     0.707
Ava_4573
Protein of unknown function DUF1232.
 
     0.707
Ava_0753
Pentapeptide repeat protein.
  
     0.690
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.