STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_4792Conserved hypothetical protein. (286 aa)    
Predicted Functional Partners:
Ava_0607
Conserved hypothetical protein.
  
     0.746
Ava_0240
Protein of unknown function DUF490.
  
     0.707
Ava_3560
Conserved hypothetical protein.
  
     0.697
Ava_0033
Conserved hypothetical protein.
  
     0.681
Ava_2758
Conserved hypothetical protein.
  
     0.677
Ava_3480
Conserved hypothetical protein.
  
     0.673
Ava_1589
Conserved hypothetical protein.
  
     0.650
Ava_1518
Conserved hypothetical protein.
  
     0.649
Ava_0400
Conserved hypothetical protein.
  
     0.643
Ava_0138
Conserved hypothetical protein.
  
     0.634
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.