STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ17961.1Putative P-loop ATPase. (813 aa)    
Predicted Functional Partners:
CDQ20988.1
Hypothetical protein; Phage/plasmid primase, P4 family, C-terminal domain.
     0.935
CDQ17960.1
VRR-NUC domain protein.
 
     0.881
CDQ17959.1
DNA methylase.
 
     0.866
polA_1
DNA polymerase I, thermostable.
 
     0.861
CDQ17968.1
Hypothetical protein.
 
     0.852
CDQ17969.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.846
CDQ17962.1
Hypothetical protein.
       0.773
CDQ17963.1
Hypothetical protein.
       0.773
CDQ17964.1
Hypothetical protein.
       0.773
clpP_1
ATP-dependent Clp protease proteolytic subunit.
  
     0.631
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.