Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDQ18034.1 | dgkA | BN982_00280 | BN982_00282 | Hypothetical protein. | Undecaprenol kinase. | 0.400 |
CDQ18034.1 | era | BN982_00280 | BN982_00281 | Hypothetical protein. | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.533 |
CDQ18034.1 | recO | BN982_00280 | BN982_00279 | Hypothetical protein. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.732 |
CDQ18034.1 | ybeY | BN982_00280 | BN982_00283 | Hypothetical protein. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.400 |
dgkA | CDQ18034.1 | BN982_00282 | BN982_00280 | Undecaprenol kinase. | Hypothetical protein. | 0.400 |
dgkA | era | BN982_00282 | BN982_00281 | Undecaprenol kinase. | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.807 |
dgkA | recO | BN982_00282 | BN982_00279 | Undecaprenol kinase. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.642 |
dgkA | ybeY | BN982_00282 | BN982_00283 | Undecaprenol kinase. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.959 |
era | CDQ18034.1 | BN982_00281 | BN982_00280 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Hypothetical protein. | 0.533 |
era | dgkA | BN982_00281 | BN982_00282 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Undecaprenol kinase. | 0.807 |
era | recO | BN982_00281 | BN982_00279 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.841 |
era | ybeY | BN982_00281 | BN982_00283 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.989 |
recO | CDQ18034.1 | BN982_00279 | BN982_00280 | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | Hypothetical protein. | 0.732 |
recO | dgkA | BN982_00279 | BN982_00282 | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | Undecaprenol kinase. | 0.642 |
recO | era | BN982_00279 | BN982_00281 | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.841 |
recO | ybeY | BN982_00279 | BN982_00283 | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.578 |
ybeY | CDQ18034.1 | BN982_00283 | BN982_00280 | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | Hypothetical protein. | 0.400 |
ybeY | dgkA | BN982_00283 | BN982_00282 | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | Undecaprenol kinase. | 0.959 |
ybeY | era | BN982_00283 | BN982_00281 | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.989 |
ybeY | recO | BN982_00283 | BN982_00279 | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.578 |