STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18043.1Signal peptide peptidase SppA, 36K type. (452 aa)    
Predicted Functional Partners:
CDQ18042.1
SigmaW regulon antibacterial.
 
    0.988
CDQ18041.1
Hypothetical protein.
  
    0.875
ybeZ
PhoH-like protein.
       0.570
CDQ18039.1
Sporulation protein YqfD.
       0.570
CDQ18040.1
Sporulation protein YqfC.
       0.570
CDQ18044.1
Hypothetical protein.
       0.534
yqiK
Inner membrane protein YqiK.
   
    0.531
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.508
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.