STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhdG_1Putative amino acid permease YhdG. (232 aa)    
Predicted Functional Partners:
yhdG_2
Putative amino acid permease YhdG.
     0.994
CDQ19197.1
Lysine transporter.
 
     0.782
adhB
Alcohol dehydrogenase 2.
 
   0.675
bdhA_3
NADH-dependent butanol dehydrogenase A.
      0.603
aroE
Shikimate dehydrogenase.
   
 0.601
CDQ18156.1
Alpha-amylase precursor.
   
  0.586
apu
Alpha-amylase/pullulanase; Belongs to the glycosyl hydrolase 13 family.
   
  0.586
treA
Trehalose-6-phosphate hydrolase.
   
  0.586
malL
Oligo-1,6-glucosidase.
   
  0.586
nplT
Neopullulanase.
   
  0.586
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.