Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comPSensor histidine kinase ComP. (774 aa)    
Predicted Functional Partners:
comA
Competence protein A.
 
 0.996
degU_2
Protease production enhancer protein.
 
 0.894
degU_1
Protease production enhancer protein.
 
 0.881
liaR_2
Transcriptional regulatory protein LiaR.
 
 0.880
liaR_1
Transcriptional regulatory protein LiaR.
 
 0.879
liaR_3
Transcriptional regulatory protein LiaR.
 
 0.861
gerE
Spore germination protein GerE.
 
  0.831
cheV
Chemotaxis protein CheV.
  
 0.772
CDQ18690.1
Putative membrane protein.
  
  
 0.607
CDQ18765.1
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.595
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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