Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ysdBSigma-w pathway protein YsdB. (134 aa)    
Predicted Functional Partners:
CDQ19294.1
Hypothetical protein.
  
     0.695
rsiW
Anti-sigma-W factor RsiW.
  
    0.678
CDQ21113.1
Hypothetical protein.
  
     0.653
CDQ18241.1
Putative membrane protein.
  
     0.647
CDQ19770.1
Hypothetical protein.
  
     0.631
yneB
Hypothetical protein; Resolvase homolog YneB.
  
     0.629
CDQ19897.1
Putative membrane protein.
  
     0.602
CDQ18252.1
dUTPase.
       0.595
hflK
Modulator of FtsH protease HflK; HflC and HflK could encode or regulate a protease.
  
     0.584
CDQ18296.1
Putative membrane protein.
  
     0.576
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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