STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytrHSporulation membrane protein YtrH. (110 aa)    
Predicted Functional Partners:
ytrI
Sporulation membrane protein YtrI.
 
  
 0.981
yunB
Sporulation protein YunB.
  
   
 0.763
spoIIE
Stage II sporulation protein E.
  
     0.755
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.747
spoIIM
Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.
  
     0.737
CDQ17910.1
Conserved membrane protein YqhR.
  
     0.729
CDQ17901.1
Stage III sporulation protein AF.
  
     0.716
CDQ17921.1
Bacterial protein YqhG of unknown function.
  
     0.711
ylbJ
Sporulation integral membrane protein YlbJ.
  
   
 0.705
spoVID
Stage VI sporulation protein D.
  
     0.702
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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