STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrISporulation membrane protein YtrI. (165 aa)    
Predicted Functional Partners:
ytrH
Sporulation membrane protein YtrH.
 
  
 0.958
CDQ21031.1
Hypothetical protein.
  
     0.775
CDQ17910.1
Conserved membrane protein YqhR.
  
     0.774
CDQ18018.1
Hypothetical protein.
  
     0.773
spoVID
Stage VI sporulation protein D.
  
     0.770
yabQ
Spore protein YabQ.
  
     0.766
bofA
Bypass-of-forespore protein A.
  
     0.764
fliJ
Chemotaxis CheF protein.
  
     0.763
CDQ19489.1
Hypothetical protein.
  
   
 0.761
CDQ18193.1
Hypothetical protein.
  
     0.756
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.