STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjFPhage shock protein A homolog. (223 aa)    
Predicted Functional Partners:
CDQ20298.1
DNA-binding transcriptional activator PspC.
  
 
 0.953
CDQ18299.1
Hypothetical protein.
 
     0.919
CDQ18296.1
Putative membrane protein.
 
     0.843
CDQ19237.1
Hypothetical protein.
  
  
 0.639
speE_1
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.622
yqiK
Inner membrane protein YqiK.
  
  
 0.614
CDQ18690.1
Putative membrane protein.
  
  
 0.602
CDQ18297.1
Hypothetical protein.
       0.598
CDQ18300.1
Bile acid transporter.
       0.461
cheV
Chemotaxis protein CheV.
    
 
 0.442
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.