STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18308.1DNA methylase. (330 aa)    
Predicted Functional Partners:
ezrA
Septation ring formation regulator EzrA.
 
     0.772
CDQ21018.1
Competence protein.
  
     0.768
CDQ19507.1
Tetratricopeptide repeat protein.
  
     0.754
CDQ19907.1
Hypothetical protein; Belongs to the UPF0356 family.
  
     0.734
CDQ21103.1
Putative ABC-type exoprotein transport system, permease component.
 
     0.717
ltaS1_1
Lipoteichoic acid synthase 1; Belongs to the LTA synthase family.
  
     0.715
cobB
NAD-dependent protein deacetylase.
   
    0.708
ytgP_1
Putative cell division protein YtgP.
  
    0.702
CDQ19463.1
Hypothetical protein.
  
     0.700
ltaS1_3
Lipoteichoic acid synthase 1; Belongs to the LTA synthase family.
  
     0.695
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.