STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjmCPutative oxidoreductase YjmC. (337 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase.
  
    0.841
CDQ18425.1
Soluble hydrogenase 42 kDa subunit.
     
  0.787
comB
Putative 2-phosphosulfolactate phosphatase.
     
 0.709
yiaO_1
Extracytoplasmic solute receptor protein YiaO.
 
     0.672
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.671
pckA
Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
     
 0.665
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.648
aceB
Malate synthase A; Belongs to the malate synthase family.
     
  0.637
siaT_1
Neu5Ac permease.
 
     0.623
CDQ17864.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
   
 
  0.603
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: low (16%) [HD]