STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuAMannonate dehydratase. (367 aa)    
Predicted Functional Partners:
uxuB
Putative oxidoreductase UxuB.
 
  0.974
kdgA_1
KHG/KDPG aldolase.
 
   
 0.871
siaT_1
Neu5Ac permease.
 
     0.802
yjmD
Putative zinc-type alcohol dehydrogenase-like protein YjmD.
 
  
 0.802
mtlD
Mannitol-1-phosphate 5-dehydrogenase.
  
 
 0.778
yjmC
Putative oxidoreductase YjmC.
  
    0.748
siaT_2
Neu5Ac permease.
 
    0.731
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
  
 0.712
kdgK_2
2-dehydro-3-deoxygluconokinase.
 
  
 0.711
kdgA_2
KHG/KDPG aldolase.
 
   
 0.653
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.