STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18569.1Uncharacterized protein YoxC, contains an MCP-like domain; Putative protein containing a divergent version of the methyl-accepting chemotaxis-like domain protein. (137 aa)    
Predicted Functional Partners:
CDQ18566.1
Gas vesicle protein.
  
    0.814
CDQ18328.1
Gas vesicle protein.
 
    0.763
CDQ18568.1
Uncharacterized protein YoxC, contains an MCP-like domain; Putative protein containing a divergent version of the methyl-accepting chemotaxis-like domain protein.
 
    
0.758
CDQ18567.1
Hypothetical protein.
       0.727
CDQ18334.1
Hypothetical protein; Belongs to the UPF0354 family.
 
     0.722
rsbW
Serine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
 
    0.690
spxA
Regulatory protein spx; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily.
 
    0.676
fer
Ferredoxin.
  
     0.656
CDQ18785.1
YwhD family protein.
  
     0.634
CDQ18344.1
Thiamine kinase.
  
     0.623
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.