Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yxeP_1Putative hydrolase YxeP. (397 aa)    
Predicted Functional Partners:
hom_1
Homoserine dehydrogenase.
   
   0.785
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
  0.775
mdeA_1
Methionine gamma-lyase.
  
 
  0.754
CDQ18622.1
Ectoine utilization protein EutC.
       0.741
gabD_2
Succinate-semialdehyde dehydrogenase [NADP(+)] GabD.
       0.741
CDQ18621.1
Putative peptidase.
       0.738
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.656
dapH_2
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
 
  
 0.630
CDQ18347.1
Putative dipeptidase.
    
  0.500
dapE_3
Putative succinyl-diaminopimelate desuccinylase.
    
  0.500
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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