afr_1 protein (Halobacillus dabanensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

afr_1

1,5-anhydro-D-fructose reductase. (328 aa)

Predicted Functional Partners:

iolI

0.819

iolE_1

0.747

iolE_2

0.747

gfo_2

0.637

iolG

0.633

gfo_1

0.605

ycjS_1

0.600

ycjS_2

0.585

ycjS_3

0.575

CDQ18628.1

0.574

Your Current Organism:

Halobacillus dabanensis

NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDQ18628.1	afr_1	BN982_00905	BN982_00906	GDSL-like Lipase/Acylhydrolase.	1,5-anhydro-D-fructose reductase.	0.574
afr_1	CDQ18628.1	BN982_00906	BN982_00905	1,5-anhydro-D-fructose reductase.	GDSL-like Lipase/Acylhydrolase.	0.574
afr_1	gfo_1	BN982_00906	BN982_01149	1,5-anhydro-D-fructose reductase.	Glucose--fructose oxidoreductase precursor.	0.605
afr_1	gfo_2	BN982_00906	BN982_01386	1,5-anhydro-D-fructose reductase.	Glucose--fructose oxidoreductase precursor.	0.637
afr_1	iolE_1	BN982_00906	BN982_03127	1,5-anhydro-D-fructose reductase.	Inosose dehydratase; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol).	0.747
afr_1	iolE_2	BN982_00906	BN982_03734	1,5-anhydro-D-fructose reductase.	Inosose dehydratase.	0.747
afr_1	iolG	BN982_00906	BN982_03135	1,5-anhydro-D-fructose reductase.	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase; Involved in the oxidation of myo-inositol (MI) and D-chiro- inositol (DCI) to 2-keto-myo-inositol (2KMI or 2-inosose) and 1-keto-D- chiro-inositol (1KDCI), respectively.	0.633
afr_1	iolI	BN982_00906	BN982_03133	1,5-anhydro-D-fructose reductase.	Inosose isomerase.	0.819
afr_1	ycjS_1	BN982_00906	BN982_01150	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YcjS.	0.600
afr_1	ycjS_2	BN982_00906	BN982_01226	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YcjS.	0.585
afr_1	ycjS_3	BN982_00906	BN982_01385	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YcjS.	0.575
gfo_1	afr_1	BN982_01149	BN982_00906	Glucose--fructose oxidoreductase precursor.	1,5-anhydro-D-fructose reductase.	0.605
gfo_1	iolE_1	BN982_01149	BN982_03127	Glucose--fructose oxidoreductase precursor.	Inosose dehydratase; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol).	0.550
gfo_1	iolE_2	BN982_01149	BN982_03734	Glucose--fructose oxidoreductase precursor.	Inosose dehydratase.	0.652
gfo_1	iolI	BN982_01149	BN982_03133	Glucose--fructose oxidoreductase precursor.	Inosose isomerase.	0.560
gfo_1	ycjS_1	BN982_01149	BN982_01150	Glucose--fructose oxidoreductase precursor.	Putative oxidoreductase YcjS.	0.825
gfo_2	afr_1	BN982_01386	BN982_00906	Glucose--fructose oxidoreductase precursor.	1,5-anhydro-D-fructose reductase.	0.637
gfo_2	iolE_1	BN982_01386	BN982_03127	Glucose--fructose oxidoreductase precursor.	Inosose dehydratase; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol).	0.624
gfo_2	iolE_2	BN982_01386	BN982_03734	Glucose--fructose oxidoreductase precursor.	Inosose dehydratase.	0.731
gfo_2	iolI	BN982_01386	BN982_03133	Glucose--fructose oxidoreductase precursor.	Inosose isomerase.	0.560