STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18643.1H+/gluconate symporter. (469 aa)    
Predicted Functional Partners:
scrB_1
Sucrose-6-phosphate hydrolase.
      
 0.541
scrB_2
Sucrose-6-phosphate hydrolase.
      
 0.541
CDQ18644.1
Polyketide cyclase / dehydrase and lipid transport.
       0.529
ftsK
DNA translocase FtsK.
      
 0.521
comEA
ComE operon protein 1.
      
 0.521
uvrB
Excinuclease ABC subunit B.
      
 0.521
hupA
Hypothetical protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
      
 0.521
malF
Maltose transport system permease protein MalF.
      
 0.483
malG
Maltose transport system permease protein MalG.
      
 0.483
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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