STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfmJPutative NADP-dependent oxidoreductase YfmJ. (337 aa)    
Predicted Functional Partners:
CDQ20498.1
Putative aminoglycoside phosphotransferase.
 
    0.619
bbsG
(R)-benzylsuccinyl-CoA dehydrogenase.
  
     0.602
dkgB
2,5-diketo-D-gluconic acid reductase B.
   
 
 0.557
CDQ21439.1
Putative oxidoreductase/MSMEI_2347.
   
 
 0.557
CDQ18659.1
Hypothetical protein.
       0.544
qorA
Quinone oxidoreductase 1.
   
0.508
ohrB
General stress protein 17o.
    0.477
CDQ19060.1
Putative domain 1.
  
    0.445
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.443
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  0.438
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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