Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sauUPutative sulfoacetate transporter SauU. (289 aa)    
Predicted Functional Partners:
yecD_1
Isochorismatase family protein YecD.
       0.585
hom_2
Homoserine dehydrogenase.
   
  0.513
CDQ18255.1
SNARE associated Golgi protein.
  
  
  0.500
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.490
pabB
Para-aminobenzoate synthase component 1.
   
 
 0.466
CDQ19904.1
Putative cell-wall binding lipoprotein.
  
     0.419
patB
Cystathionine beta-lyase PatB.
     
 0.408
CDQ19507.1
Tetratricopeptide repeat protein.
  
   
 0.407
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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