STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lipC_2Spore germination lipase LipC. (311 aa)    
Predicted Functional Partners:
CDQ18682.1
Hypothetical protein.
 
  
 0.963
CDQ17767.1
DnaD domain protein.
  
 0.862
CDQ17936.1
Prophage endopeptidase tail.
  
   0.721
CDQ20849.1
Phage minor structural protein, N-terminal region.
  
   0.721
CDQ21711.1
Phage minor structural protein, N-terminal region.
  
   0.721
CDQ21103.1
Putative ABC-type exoprotein transport system, permease component.
  
     0.681
CDQ19566.1
Hypothetical protein; Belongs to the UPF0346 family.
 
  
 0.660
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
     
 0.625
cysK_1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.621
CDQ21045.1
Esterase.
  
  
 0.608
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.