STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaS_1Sensor histidine kinase LiaS. (348 aa)    
Predicted Functional Partners:
liaR_1
Transcriptional regulatory protein LiaR.
  0.997
CDQ18690.1
Putative membrane protein.
 
  
 0.979
liaR_2
Transcriptional regulatory protein LiaR.
  0.911
degU_2
Protease production enhancer protein.
  0.909
liaR_3
Transcriptional regulatory protein LiaR.
  0.904
comA
Competence protein A.
 
  0.896
degU_1
Protease production enhancer protein.
 
  0.892
CDQ18689.1
Phage shock protein A.
 
    0.860
gerE
Spore germination protein GerE.
 
  0.851
CDQ19237.1
Hypothetical protein.
 
    0.781
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.