STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18736.1TRAP-type C4-dicarboxylate transport system, small permease component. (184 aa)    
Predicted Functional Partners:
siaT_4
Neu5Ac permease.
 
  0.980
dctP_2
C4-dicarboxylate-binding periplasmic protein precursor.
 
 
  0.958
CDQ18525.1
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
  
  
  0.876
siaT_9
Neu5Ac permease.
 
  0.801
siaT_3
Neu5Ac permease.
 
  0.794
siaT_8
Neu5Ac permease.
  
  
 
0.778
CDQ18892.1
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
  
  
 
0.767
siaT_2
Neu5Ac permease.
  
  0.766
yiaO_2
Extracytoplasmic solute receptor protein YiaO.
 
 
  0.748
dctP_1
C4-dicarboxylate-binding periplasmic protein precursor.
 
 
  0.747
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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