STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18754.1RNA pyrophosphohydrolase; Belongs to the Nudix hydrolase family. (155 aa)    
Predicted Functional Partners:
CDQ18023.1
Metal-binding protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
    
  0.681
ytkD_1
Putative 8-oxo-dGTP diphosphatase YtkD; Belongs to the Nudix hydrolase family.
  
     0.677
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.673
cinA
Exported protein 10.
    
  0.634
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.626
CDQ19346.1
NADH pyrophosphatase; Belongs to the Nudix hydrolase family.
  
     0.498
thiM
Hydroxyethylthiazole kinase.
     
  0.486
CDQ21312.1
Helix-turn-helix.
    
  0.481
nudC_2
NADH pyrophosphatase.
  
     0.468
CDQ18743.1
Pseudaminic acid biosynthesis N-acetyl transferase.
  
    0.422
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.