Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18843.1Hypothetical protein; H-34. (338 aa)    
Predicted Functional Partners:
spoIVA
Stage IV sporulation protein A.
  
  
 0.905
spoIIQ
Stage II sporulation protein Q.
 
   
 0.888
CDQ18056.1
Stage II sporulation protein P.
  
  
 0.835
lytC_4
N-acetylmuramoyl-L-alanine amidase LytC precursor.
 
 0.803
yabP
Spore protein YabP.
 
   
 0.762
CDQ18039.1
Sporulation protein YqfD.
  
  
 0.741
spoIIIAH
Stage III sporulation protein AH.
  
  
 0.724
CDQ18819.1
Stage II sporulation protein R.
  
   
 0.700
CDQ19439.1
Stage V sporulation protein AE.
  
   
 0.694
CDQ19437.1
Stage V sporulation protein AC.
  
   
 0.659
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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