STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18870.1Hydroxypyruvate isomerase. (322 aa)    
Predicted Functional Partners:
ycjS_1
Putative oxidoreductase YcjS.
 
  0.951
gfo_1
Glucose--fructose oxidoreductase precursor.
 
 
  0.936
CDQ18867.1
Trehalose utilization protein.
 
     0.919
gfo_2
Glucose--fructose oxidoreductase precursor.
 
 
  0.823
fruA_1
EIIABC-Fru.
  
 
  0.785
CDQ19097.1
Xylose isomerase-like TIM barrel.
 
     0.775
afr_3
1,5-anhydro-D-fructose reductase.
 
 
  0.703
CDQ18871.1
Putative integral membrane protein.
 
     0.693
gfo_3
Glucose--fructose oxidoreductase precursor.
 
 
  0.689
malR_1
Maltose operon transcriptional repressor.
  
    0.680
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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