Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylB_2Xylulose kinase; Belongs to the FGGY kinase family. (493 aa)    
Predicted Functional Partners:
ybbH_1
Putative HTH-type transcriptional regulator YbbH.
 
     0.792
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.784
araD
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.776
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.686
araA
L-arabinose isomerase.
  
 
 0.662
gndA
6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
    
 0.631
CDQ19097.1
Xylose isomerase-like TIM barrel.
    
  0.617
iolI
Inosose isomerase.
    
  0.597
kduD_3
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
     
  0.578
CDQ20048.1
Gluconate 2-dehydrogenase flavoprotein precursor.
   
 
  0.564
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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