STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ18948.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
CDQ18947.1
Polysaccharide biosynthesis protein.
       0.800
pimB_1
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase.
       0.773
CDQ18950.1
Putative glycosyl transferase.
       0.683
wbpA_2
UDP-N-acetyl-D-glucosamine 6-dehydrogenase.
       0.682
ycjS_2
Putative oxidoreductase YcjS.
       0.656
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
       0.522
epsL
Putative sugar transferase EpsL.
       0.441
CDQ18951.1
Hypothetical protein.
       0.410
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.