STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fdtBdTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose transaminase. (366 aa)    
Predicted Functional Partners:
wbpD
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase.
 
 0.985
epsL
Putative sugar transferase EpsL.
 
 0.950
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
 
 0.935
epsM
Putative acetyltransferase EpsM.
 
 0.931
pseB
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
 
 0.910
epsN
Putative pyridoxal phosphate-dependent aminotransferase EpsN.
 
    
0.826
wbpA_2
UDP-N-acetyl-D-glucosamine 6-dehydrogenase.
 
  
 0.813
ycjS_2
Putative oxidoreductase YcjS.
 
 
  0.776
rfbB
dTDP-glucose 4,6-dehydratase.
  
 
 0.698
CDQ18947.1
Polysaccharide biosynthesis protein.
 
  
 0.677
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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