Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ureGUrease accessory protein UreG. (204 aa)    
Predicted Functional Partners:
ureF
Urease accessory protein UreF.
 0.998
ureC
Urease subunit alpha.
 
 0.996
ureD1
Urease accessory protein UreD.
 
 0.996
ureE
Urease accessory protein UreE.
 
 0.992
ureB
Urease subunit beta.
 
 
 0.989
ureA
Urease subunit gamma.
 
 0.986
CDQ18992.1
ATP-utilizing enzymes of the PP-loop superfamily protein.
       0.727
sglT_1
Na(+)/glucose symporter.
       0.525
CDQ18984.1
Hypothetical protein.
       0.525
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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