STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmgC_5Acyl-CoA dehydrogenase. (382 aa)    
Predicted Functional Partners:
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.904
etfA_2
Electron transfer flavoprotein large subunit.
  0.887
CDQ20498.1
Putative aminoglycoside phosphotransferase.
 
  0.866
etfA_3
Electron transfer flavoprotein large subunit.
  0.865
etfB_2
Electron transfer flavoprotein small subunit.
 
  0.859
etfA_1
Electron transfer flavoprotein large subunit.
  0.800
etfB_3
Electron transfer flavoprotein small subunit.
  0.760
etfB_1
Electron transfer flavoprotein small subunit.
  0.741
mmgB_2
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 
  0.730
echA8_1
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.723
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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