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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpC_1Putative chromate transport protein. (191 aa)    
Predicted Functional Partners:
srpC_2
Putative chromate transport protein.
 
   
0.854
ywrD
Putative gamma-glutamyltransferase YwrD.
 
     0.704
srpC_3
Putative chromate transport protein.
 
   
0.485
oppF_1
Stage 0 sporulation protein KE.
       0.481
gsiB_1
Glutathione-binding protein GsiB precursor.
       0.480
oppD_1
Stage 0 sporulation protein KD.
       0.480
gsiD
Glutathione transport system permease protein GsiD.
       0.455
gsiC
Glutathione transport system permease protein GsiC.
       0.429
lrpC_1
HTH-type transcriptional regulator LrpC.
 
    0.404
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.