STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuS_1Sensor histidine kinase DcuS. (547 aa)    
Predicted Functional Partners:
dcuR_1
Transcriptional regulatory protein DcuR.
 0.994
dcuR_2
Transcriptional regulatory protein DcuR.
 0.942
srrA_2
Staphylococcal respiratory response protein A.
 
 0.918
citT
Transcriptional regulatory protein CitT.
 0.914
dctP_3
C4-dicarboxylate-binding periplasmic protein precursor.
 
  
  0.876
cheV
Chemotaxis protein CheV.
     
 0.792
CDQ19076.1
TRAP transporter solute receptor, TAXI family.
 
     0.572
CDQ19072.1
Hypothetical protein.
 
     0.566
CDQ19130.1
Tripartite tricarboxylate transporter family receptor.
 
    0.561
CDQ19077.1
Hypothetical protein.
 
     0.535
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.