Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19077.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
siaT_7
Neu5Ac permease.
 
 
  0.964
CDQ19076.1
TRAP transporter solute receptor, TAXI family.
 
 
  0.942
CDQ19079.1
Ureidoglycolate lyase.
       0.714
CDQ19050.1
TRAP transporter solute receptor, TAXI family.
 
 
  0.698
siaT_6
Neu5Ac permease.
 
 
  0.681
actIII_1
Putative ketoacyl reductase.
       0.668
yodF_1
Putative symporter YodF; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.576
siaT_1
Neu5Ac permease.
  
     0.568
nprS
Stearolysin precursor; Extracellular zinc metalloprotease.
  
     0.550
CDQ19131.1
Tripartite tricarboxylate transporter TctB family protein.
  
     0.538
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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