STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19083.12-keto-3-deoxy-galactonokinase. (339 aa)    
Predicted Functional Partners:
dgoD
D-galactonate dehydratase.
 
 
 0.969
kdgA_3
KHG/KDPG aldolase.
 
 
 0.914
ykfB
L-Ala-D/L-Glu epimerase.
 
 
 0.649
kdgR_2
Transcriptional regulator KdgR.
 
     0.642
kdgA_2
KHG/KDPG aldolase.
 
 
 0.627
kdgA_1
KHG/KDPG aldolase.
 
 
 0.626
ghrB_1
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.584
menC
O-succinylbenzoate synthase.
  
 
 0.570
ilvD_1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
 0.528
ilvD_2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
 0.528
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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