STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19089.1Hypothetical protein. (387 aa)    
Predicted Functional Partners:
sipW
Signal peptidase I W.
       0.693
CDQ20549.1
Beta-hexosaminidase A precursor.
  
 
 0.602
CDQ19911.1
Chromosome segregation protein SMC.
  
     0.556
xynB_1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
    
 0.525
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
    
 0.525
abnA
Extracellular endo-alpha-(1->5)-L-arabinanase 1 precursor.
    
 0.525
glpD
Aerobic glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
     
  0.521
tasA
Spore coat-associated protein N precursor.
       0.519
CDQ20306.1
Hypothetical protein.
    
  0.486
CDQ20589.1
Hypothetical protein.
  
     0.429
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.