STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19097.1Xylose isomerase-like TIM barrel. (254 aa)    
Predicted Functional Partners:
afr_2
1,5-anhydro-D-fructose reductase.
 
  0.966
gfo_2
Glucose--fructose oxidoreductase precursor.
 
 
  0.892
CDQ18870.1
Hydroxypyruvate isomerase.
 
    0.839
CDQ21369.1
Hydroxypyruvate isomerase.
 
    0.836
ycjS_1
Putative oxidoreductase YcjS.
  
 
  0.819
ycjS_3
Putative oxidoreductase YcjS.
 
 
  0.801
fruA_1
EIIABC-Fru.
  
 
  0.799
CDQ18867.1
Trehalose utilization protein.
 
     0.784
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG).
  
 
 0.763
afr_3
1,5-anhydro-D-fructose reductase.
  
 
  0.749
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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