Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
xynB_2Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (537 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.972
nagC_3
N-acetylglucosamine repressor.
 
  
 0.786
araA
L-arabinose isomerase.
 
  
 0.778
abfA
Intracellular exo-alpha-(1->5)-L-arabinofuranosidase.
 
  
 0.722
yicJ
Inner membrane symporter YicJ.
 
  
 0.682
xylB_3
Xylulose kinase.
 
  
 0.651
abf2
Intracellular exo-alpha-L-arabinofuranosidase 2.
 
  
 0.644
nagC_2
N-acetylglucosamine repressor.
 
  
 0.630
abnA
Extracellular endo-alpha-(1->5)-L-arabinanase 1 precursor.
  
     0.532
CDQ19089.1
Hypothetical protein.
    
 0.525
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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