STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB_2Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (537 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.895
nagC_3
N-acetylglucosamine repressor.
 
  
 0.777
abfA
Intracellular exo-alpha-(1->5)-L-arabinofuranosidase.
 
  
 0.657
xylB_3
Xylulose kinase.
 
  
 0.635
yicJ
Inner membrane symporter YicJ.
 
  
 0.630
nagC_2
N-acetylglucosamine repressor.
 
  
 0.614
araA
L-arabinose isomerase.
 
 
 0.594
CDQ20996.1
Enterobactin/ferric enterobactin esterase.
    
 0.583
CDQ19089.1
Hypothetical protein.
    
 0.580
abf2
Intracellular exo-alpha-L-arabinofuranosidase 2.
 
  
 0.564
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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