STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lutR_3L-lactate utilization operon repressor. (236 aa)    
Predicted Functional Partners:
ydfH_2
Putative HTH-type transcriptional regulator YdfH.
  
    0.755
ydfH_3
Putative HTH-type transcriptional regulator YdfH.
  
    0.746
csiR
Carbon starvation induced regulator.
  
    0.736
yvoA_2
HTH-type transcriptional repressor YvoA.
  
    0.677
ydfH_1
Putative HTH-type transcriptional regulator YdfH.
  
    0.582
yvoA_1
HTH-type transcriptional repressor YvoA.
  
    0.576
tsaC1_2
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2.
  
 
  0.562
CDQ19119.1
Galactose mutarotase; Converts alpha-aldose to the beta-anomer.
       0.550
dasR
HTH-type transcriptional repressor DasR.
  
    0.541
treR
Trehalose operon transcriptional repressor.
  
    0.540
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.