STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
citTTranscriptional regulatory protein CitT. (225 aa)    
Predicted Functional Partners:
citS_1
Sensor protein CitS.
 0.983
dcuS_1
Sensor histidine kinase DcuS.
 
 0.931
dcuS_2
Sensor histidine kinase DcuS.
 
 0.931
CDQ19130.1
Tripartite tricarboxylate transporter family receptor.
 
    0.830
CDQ19132.1
Tripartite tricarboxylate transporter TctA family protein.
 
     0.735
cheV
Chemotaxis protein CheV.
     
 0.734
fliN
Flagellar motor switch protein FliN.
   
 
  0.674
CDQ19131.1
Tripartite tricarboxylate transporter TctB family protein.
 
     0.532
cheB
Chemotaxis response regulator protein-glutamate methylesterase.
  
  
  0.401
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.