STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19148.1BadF/BadG/BcrA/BcrD ATPase family protein. (335 aa)    
Predicted Functional Partners:
murQ
N-acetylmuramic acid 6-phosphate etherase.
 
 0.994
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.859
msmE_5
Multiple sugar-binding protein precursor.
 
    0.846
ptsG_1
EIICBA-Glc.
    
  0.789
ybbH_2
Putative HTH-type transcriptional regulator YbbH.
 
     0.786
CDQ20548.1
Hypothetical protein.
 
    0.728
nagB
Glucosamine-6-phosphate deaminase 1.
  
 
  0.671
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.599
sacX
PTS system sac EIIBC component.
    
  0.539
treB
EIIBC-Tre.
    
  0.539
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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