STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19197.1Lysine transporter. (80 aa)    
Predicted Functional Partners:
yhdG_3
Putative amino acid permease YhdG.
     0.989
yhdG_1
Putative amino acid permease YhdG.
 
     0.782
CDQ18686.1
Hypothetical protein.
  
     0.575
CDQ18156.1
Alpha-amylase precursor.
    
  0.525
apu
Alpha-amylase/pullulanase; Belongs to the glycosyl hydrolase 13 family.
    
  0.525
treA
Trehalose-6-phosphate hydrolase.
    
  0.525
malL
Oligo-1,6-glucosidase.
    
  0.525
nplT
Neopullulanase.
    
  0.525
CDQ21058.1
Beta/alpha-amylase precursor.
    
  0.525
CDQ19142.1
Zinc carboxypeptidase.
 
     0.515
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.