Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mfd_1Transcription-repair-coupling factor. (471 aa)    
Predicted Functional Partners:
CDQ19204.1
DNA utilization protein GntX.
 
  
 0.975
comGC
ComG operon protein 3 precursor.
  
  
 0.917
comEA
ComE operon protein 1.
   
  
 0.908
CDQ17983.1
Type IV pilin biogenesis protein.
   
  
 0.894
gspE_1
Type II traffic warden ATPase.
   
  
 0.863
gspE_2
Type II traffic warden ATPase.
   
  
 0.863
ssb
Helix-destabilizing protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.835
CDQ18060.1
ComEC family competence protein.
   
  
 0.775
CDQ19754.1
DNA protecting protein DprA.
   
  
 0.754
comC
Late competence protein ComC.
   
  
 0.751
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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